tongue neoplasm: A neoplasm (disease) that involves the tongue.
Benign neoplasm: Scapula and long bones of upper limb
DOID EFO Endpoint Browser PheWeb
CD2_BENIGN_BONE_SCAPULA_LONG_UPPER
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
370 |
4. Check minimum number of eventsNone |
370 |
5. Include endpointsNone |
370 |
6. Filter based on genotype QC (FinnGen only) |
370 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D16
- Name in latin
- Neoplasma benignum scapulae sive ossium longorum membri superioris
Similar endpoints
↥List of similar endpoints to Benign neoplasm: Scapula and long bones of upper limb based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Scapula and long bones of upper limb
- Benign neoplasm of bone and articular cartilage
- Benign neoplasm of bone and articular cartilage
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | |||
Whole population | 3001 | 1340 | 1651 |
Only index persons | 2788 | 1256 | 1532 |
Unadjusted period prevalence (%) | |||
Whole population | 0.04 | 0.04 | 0.05 |
Only index persons | 0.05 | 0.05 | 0.06 |
Median age at first event (years) | |||
Whole population | 28.48 | 34.17 | 23.81 |
Only index persons | 27.91 | 34.14 | 22.80 |
-FinnGen-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | 370 | 196 | 174 |
Unadjusted period prevalence (%) | 0.07 | 0.07 | 0.08 |
Median age at first event (years) | 34.43 | 34.94 | 33.86 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 335
- Matched controls
- 3351
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_BONE_SCAPULA_LONG_UPPER and mortality.
Females
Parameter | HR [95% CI] | p-value |
---|---|---|
CD2_BENIGN_BONE_SCAPULA_LONG_UPPER | 1.04 [0.75, 1.44] | 0.814 |
Birth year | 0.993 [0.98, 1.0] | 0.1 |
During the follow-up period (1.1.1998 — 31.12.2019), 53 out of 841 females with CD2_BENIGN_BONE_SCAPULA_LONG_UPPER died.
Males
Parameter | HR [95% CI] | p-value |
---|---|---|
CD2_BENIGN_BONE_SCAPULA_LONG_UPPER | 0.846 [0.65, 1.1] | 0.217 |
Birth year | 0.987 [0.98, 1.0] | 0.007 |
During the follow-up period (1.1.1998 — 31.12.2019), 69 out of 986 males with CD2_BENIGN_BONE_SCAPULA_LONG_UPPER died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_BONE_SCAPULA_LONG_UPPER.N-year risk | Females | Males |
---|---|---|
1 | 0.075% | 0.198% |
5 | 0.646% | 1.007% |
10 | 1.443% | 2.695% |
15 | 2.829% | 5.179% |
20 | 5.114% | 8.344% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_BONE_SCAPULA_LONG_UPPER – Benign neoplasm: Scapula and long bones of upper limb
GWS hits: 1