No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
521 |
4. Check minimum number of eventsNone |
521 |
5. Include endpointsNone |
521 |
6. Filter based on genotype QC (FinnGen only) |
521 |
Control definitions (FinnGen only)
- Control exclude
- AB1_INTESTINAL_INFECTIONS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to Other protozoal intestinal diseases based on the number of shared cases.
Similar with more cases:
- Intestinal infectious diseases
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | |||
Whole population | 4130 | 2179 | 1912 |
Only index persons | 3443 | 1892 | 1551 |
Unadjusted period prevalence (%) | |||
Whole population | 0.06 | 0.06 | 0.05 |
Only index persons | 0.06 | 0.07 | 0.06 |
Median age at first event (years) | |||
Whole population | 32.48 | 34.90 | 29.57 |
Only index persons | 34.41 | 35.94 | 32.55 |
-FinnGen-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | 521 | 327 | 194 |
Unadjusted period prevalence (%) | 0.10 | 0.11 | 0.09 |
Median age at first event (years) | 44.84 | 42.69 | 48.47 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 452
- Matched controls
- 4520
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint AB1_OTHER_PROTOZOAL and mortality.
Females
Parameter | HR [95% CI] | p-value |
---|---|---|
AB1_OTHER_PROTOZOAL | 1.862 [1.43, 2.42] | < 0.001 |
Birth year | 0.997 [0.99, 1.01] | 0.498 |
During the follow-up period (1.1.1998 — 31.12.2019), 137 out of 1428 females with AB1_OTHER_PROTOZOAL died.
Males
Parameter | HR [95% CI] | p-value |
---|---|---|
AB1_OTHER_PROTOZOAL | 1.772 [1.39, 2.27] | < 0.001 |
Birth year | 0.987 [0.98, 1.0] | 0.013 |
During the follow-up period (1.1.1998 — 31.12.2019), 128 out of 1146 males with AB1_OTHER_PROTOZOAL died.
Mortality risk
Mortality risk for people of age
years, who have AB1_OTHER_PROTOZOAL.N-year risk | Females | Males |
---|---|---|
1 | 0.177% | 0.302% |
5 | 1.094% | 1.879% |
10 | 2.787% | 4.981% |
15 | 5.699% | 9.485% |
20 | 9.974% | 15.868% |
Relationships between endpoints
↥Index endpoint: AB1_OTHER_PROTOZOAL – Other protozoal intestinal diseases
GWS hits: -